WebUse of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution (Q35878822) From Wikidata. Jump to navigation Jump to search. scientific article published on 16 March 2012. edit. Language Label Description Web15. mar 2012 · The resulting models with the best Phaser likelihood scores are then refined with phenix.refine and used to create a new set of density-modified maps. These maps are averaged to yield a single averaged density-modified map. ... Article PubMed CAS Google Scholar Schwarzenbacher R, Godzik A, Grzechnik SK, Jaroszewski L (2004) The …
PAIREF: paired refinement also for Phenix users - PMC
Web8. okt 2009 · PHENIX has been developed to provide a comprehensive system for macromolecular crystallographic structure solution with an emphasis on the automation of all procedures. WebRefinement of Atomic Displacement Parameters (ADP or B-factors) An ADP in phenix.refine is defined as a sum of three contributions: Utotal = Ulocal + Utls + Ucryst. where Utotal is the total ADP, Ulocal reflects the local atomic vibration (also named as residual B) and Ucryst reflects global lattice vibrations. flight vy7821
Towards automated crystallographic structure refinement with phenix ...
Webphenix.refine is a program within the PHENIX package that supports crystallographic structure refinement against experi-mental data with a wide range of upper resolution limits using a large repertoire of model parameterizations. It has several automation features and is also highly flexible. Several WebThe graphical interface for phenix.refine runs the unmodified command-line version; default settings are unchanged. All parameters should be configurable through the GUI, although some of these (such as NCS restraint groups) are handled in a non-standard way. WebThe PHENIX software suite is a highly automated system for macromolecular structure determination that can rapidly arrive at an initial partial model of a structure without … flightvtracker tampa to austin